About Lipotype ZOOM
Copyright 2012-2022 Lipotype GmbH
- Author: Mathias Gerl (ZOOM@lipotype.com)
- Date: Thu 04 May 2023
- Version: 1.22
- Notice: "LipotypeZoom", as well as the source and object code of "LipotypeZoom" and the information contained therein are property of Lipotype. Use of Lipotype Zoom is subject to a respective agreement with Lipotype and, unless agreed otherwise in writing, no commercialization, reproduction, re-engineering, publication or other use of "LipotypeZoom" is allowed. "Lipotype Zoom” is based on R and the following R packages: Biobase (2.56.0), BiocGenerics (0.42.0), d3heatmap (0.6.1.2), DiagrammeR (1.0.9), dplyr (1.0.10), DT (0.26), ggplot2 (3.4.0), ggvis (0.4.7), gplots (3.1.3), jsonlite (1.8.3), lazyeval (0.2.2), lipotypeFunctions (0.8.5), pcaMethods (1.88.0), plyr (1.8.7), purrr (0.3.5), rbokeh (0.5.2), RColorBrewer (1.1-3), readr (2.1.3), shiny (1.7.3), shinyBS (0.61.1), shinydashboard (0.7.2), shinyjs (2.1.0), shinythemes (1.2.0), tidyr (1.2.1), visNetwork (2.1.2).
Privacy Policy
Cohort Selection
Selected Cohorts
Excluded Cohorts
Rename & reassign Cohorts
Select Replicates from Original Names:
→ assign a "New Name"
→ press the Rename button.
→ assign a "New Name"
→ press the Rename button.
Original Names:
To revert: Select Replicates from New Names:
→ press the Back button
→ press the Back button
New Names:
Data structure of selected Cohorts and Replicates
Lipid Classes Selection
Selected Classes
Excluded Classes
After removal of lipid classes, samples will be standardized again to 100 mol% within each sample.
Data Filtering
Volcano Plot
Coverage reduction by filtering
Summary Data of filtered lipids
Summary Data of excluded lipids
Principal component analysis
To few lipids selected. A PCA is not possible.
Input Options
Axis Assignment
Advanced
Variation represented by Principal Components
Scores
Loadings
Options & Legend
Loadings Options
Score Data
Loadings Data
Heatmap
To few lipids selected. A Heatmap is not possible.
Options
Graphical Options
The status of this App
The displayed code is a unique reprentation of the selections made within the app. It is calcultated from the values you see in the table below and added to the file names of your downloads, when possible.
Introductory Video
Glossary
Advanced Graph Options
Choose the subset to be plotted by adding or removing:
Standardize on visible or keep standardization: